TQiSoft's Webgenetics(sm)

Direct Repeats of Sequences

This program lists direct repeats of within a sequence, either DNA or protein. Repeats may overlap.

Example output:

length   sequences   5' sites

   12 TCAGAGTTATAC   1664 2043
   11 AATCCGGAAAC   3502 6476
   10 AACCTTGGAA   2437 5239
   10 ACATTCTCCA   1597 1777
   10 ACTGTAGGTT   464 4445
   10 CATGAACTCT   2031 4070
   10 CCAGGACCAG   2454 4331
   10 CGCCAATTTC   1355 5895
   10 CGGATCGCAT   3585 4162
   10 GATCAAACGC   2017 3146
   10 TAGTAACCTT   3832 5235
   ...